Analysis & Tracking

Analysis Pipeline for 2D/3D Segmentation and Tracking

A strength of arivis Vision4D is its capability to segment and track objects in large multi-dimensional data sets. 

arivis Vision4D allows fast and easy analysis of 3D / 4D data sets. The pipeline approach enables the novice user to quickly run a sample analysis application, while the image analysis expert is still empowered to create even complex analysis routines and to apply them to other data sets or share them with the team. The iterative approach of arivis Vision4D allows to apply image processing filters & segmentations to a small ROI, a 3D/4D subset or the complete data set. The effect of all operations and analysis steps can be reviewed immediately on the fly. Here, the real time preview is the tool-of-choice for setting up an analysis routine even on large data sets, in 2D, in 3D or in 3D over time. Whether the Analysis Pipeline is applied to a small subset or a large volume in 3D/4D, arivis Vision4D immediately reacts to modifications and creates fast results, and allows to handle and process images at any scale.


arivis Vision4D Analysis_segment 3d objects over time

arivis Vision4D provides with the Analysis Pipeline a robust and fast tool for processing of image data gained from long-term timelapse experiments.

The Tracking module allows analysis of the movement of small (i.e. particle tracking) or large objects (e.g. nuclei, cells, organisms) over time. By identifying structures in 3D over time one can see live cell dynamics and quantitatively compare and quantify various parameters in living cells

arivis batch analysis pipeline spindle poles full resolution

The Batch Analysis Module is used for unattended execution of a pre-configured arivis Analysis Pipeline on a series of images, on multiple documents, scopes, or regions. No programming skills are needed. 


Main Features:

  • Robust image analysis covering all aspects of image processing, analysis and visualization of results via desktop, web sharing or as an option in Virtual Reality
  • Analysis Pipeline can run on the entire data volume, on selected planes, timepoints or on specified image regions (ROIs)
  • Operations can be individually parametrized and performed step-by-step even backwards
  • Integrated Machine Learning for easy segmentation without the need for expert knowledge in image analysis
  • Easy to use Operations, such as the Blob Finder , Membrane-based Segmenter 
  • Flexible Classification, Compartmentalization, Distance measurements and Tracking/Lineage 
  • Define your own analysis workflow and re-use the Analysis Pipelines on other data sets
  • Easy Import and Export of Objects with Open Source and other software
  • Option to use Virtual Reality to proofread and correct your automatically created results much more efficiently than ever before.